[ Source: r-bioc-shortread ]
Paketti: r-bioc-shortread (1.56.1-1)
Links for r-bioc-shortread
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-shortread:
- [r-bioc-shortread_1.56.1-1.dsc]
- [r-bioc-shortread_1.56.1.orig.tar.gz]
- [r-bioc-shortread_1.56.1-1.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
GNU R classes and methods for high-throughput short-read sequencing data
This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.
Muut pakettiin r-bioc-shortread liittyvät paketit
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- dep: libc6 (>= 2.7)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC:n apukirjasto
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- dep: libstdc++6 (>= 11)
- GNU standardi C++ -kirjasto, versio 3
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- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.16
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biobase
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.23.3)
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biostrings (>= 2.47.6)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.15.2)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicalignments (>= 1.15.6)
- BioConductor representation and manipulation of short genomic alignments
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- dep: r-bioc-genomicranges (>= 1.31.8)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.13.12)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rhtslib
- HTSlib high-throughput sequencing library as GNU R package
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- dep: r-bioc-rsamtools (>= 1.31.2)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-s4vectors (>= 0.17.25)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-xvector
- BioConductor representation and manpulation of external sequences
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- dep: r-bioc-zlibbioc
- (Virtual) zlibbioc Bioconductor package
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- dep: r-cran-hwriter
- HTML Writer - Outputs R objects in HTML format
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- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
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- dep: r-cran-latticeextra
- GNU R package of additional graphical displays based on lattice
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- dep: zlib1g (>= 1:1.1.4)
- pakkauskirjaston ajonaikaistiedostot
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-cran-runit
- GNU R package providing unit testing framework
Imuroi r-bioc-shortread
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| armel | 5,032.7 kt | 7,479.0 kt | [tiedostoluettelo] |