Paketti: r-bioc-fishpond (2.4.1+ds-1)

Links for r-bioc-fishpond

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Imuroi lähdekoodipaketti r-bioc-fishpond:

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External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

Differential transcript and gene expression with inferential replicates

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.

Muut pakettiin r-bioc-fishpond liittyvät paketit

depends

recommends

suggests

enhances

dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.16

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-2)

GNU R core of statistical computation and graphics system
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-qvalue

GNU R package for Q-value estimation for FDR control
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-abind

GNU R abind multi-dimensional array combination function
dep: r-cran-gtools

GNU R package with R programming tools by Greg Warnes et al
dep: r-cran-jsonlite

Robust, High Performance JSON Parser and Generator for R
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-matrixstats

GNU R methods that apply to rows and columns of a matrix
dep: r-cran-svmisc

SciViews - Miscellaneous Functions

sug: r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database
sug: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-gviz

Plotting data and annotation information along genomic coordinates
sug: r-bioc-limma

linear models for microarray data
sug: r-bioc-org.hs.eg.db

genome-wide annotation for Human
sug: r-bioc-tximeta

Transcript Quantification Import with Automatic Metadata
sug: r-bioc-tximportdata

GNU R various transcript abundance quantifiers
sug: r-cran-data.table

GNU R extension of Data.frame
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-pheatmap

GNU R package to create pretty heatmaps
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-samr

GNU R significance analysis of microarrays
sug: r-cran-testthat

GNU R testsuite

Imuroi r-bioc-fishpond

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