Paketti: r-bioc-decoupler (2.4.0+dfsg-1)
Links for r-bioc-decoupler
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-decoupler:
- [r-bioc-decoupler_2.4.0+dfsg-1.dsc]
- [r-bioc-decoupler_2.4.0+dfsg.orig.tar.xz]
- [r-bioc-decoupler_2.4.0+dfsg-1.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
infer biological activities from omics data
Many methods allow one to extract biological activities from omics data using information from prior knowledge resources, reducing the dimensionality for increased statistical power and better interpretability. DecoupleR is a Bioconductor package containing different statistical methods to extract these signatures within a unified framework. decoupleR allows the user to flexibly test any method with any resource. It incorporates methods that take into account the sign and weight of network interactions. decoupleR can be used with any omic, as long as its features can be linked to a biological process based on prior knowledge. For example, in transcriptomics gene sets regulated by a transcription factor, or in phospho-proteomics phosphosites that are targeted by a kinase.
Muut pakettiin r-bioc-decoupler liittyvät paketit
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- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.16
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1)
- GNU R core of statistical computation and graphics system
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- dep: r-cran-broom
- convert statistical analysis objects into tidy data frames with GNU R
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- dep: r-cran-dplyr
- GNU R grammar of data manipulation
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- dep: r-cran-magrittr
- GNU R forward-pipe operator
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- dep: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-purrr
- GNU R functional programming tools
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- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- dep: r-cran-stringr
- Make it easier to work with strings
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-tidyr
- GNU R package to easily tidy data
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- dep: r-cran-tidyselect
- GNU R select from a set of strings
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- dep: r-cran-withr
- GNU R package to run code 'With' temporarily modified global state
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-gsva
- Gene Set Variation Analysis for microarray and RNA-seq data
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- sug: r-bioc-summarizedexperiment
- BioConductor assay container
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- sug: r-cran-covr
- test coverage for GNU R packages
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- sug: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- sug: r-cran-ggrepel
- auto-position non-overlapping text labels in plots
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- sug: r-cran-glmnet (>= 4.1.0)
- Lasso and Elastic-Net Regularized Generalized Linear Models
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-patchwork
- GNU R the composer of plots
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- sug: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- sug: r-cran-pkgdown
- make static HTML documentation for a GNU R package
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- sug: r-cran-ranger
- Fast Implementation of Random Forests
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-roxygen2
- in-line documentation for GNU R
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- sug: r-cran-rpart
- GNU R package for recursive partitioning and regression trees
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- sug: r-cran-sessioninfo
- R Session Information
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- sug: r-cran-seurat
- Tools for Single Cell Genomics
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- sug: r-cran-testthat
- GNU R testsuite
Imuroi r-bioc-decoupler
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 2,054.8 kt | 2,216.0 kt | [tiedostoluettelo] |