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[ Source: spaln  ]

Package: spaln (3.0.2+dfsg-2 and others)

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splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

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Download spaln

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 3.0.2+dfsg-2+b1 567.9 kB1,945.0 kB [list of files]
arm64 3.0.2+dfsg-2+b1 510.3 kB2,231.0 kB [list of files]
mips64el 3.0.2+dfsg-2+b1 541.2 kB2,360.0 kB [list of files]
ppc64el 3.0.2+dfsg-2+b1 573.3 kB2,616.0 kB [list of files]
riscv64 3.0.2+dfsg-2+b1 656.4 kB3,350.0 kB [list of files]
s390x 3.0.2+dfsg-2+b1 582.8 kB2,061.0 kB [list of files]