Source Package: bioperl-run (1.7.3-11)
Links for bioperl-run
Debian Resources:
Maintainers:
External Resources:
Other Packages Related to bioperl-run
-
- adep:
debhelper-compat
(= 13)
- Package not available
-
- adep:
libmodule-build-perl
- framework for building and installing Perl modules
-
- idep:
perl
- Larry Wall's Practical Extraction and Report Language
-
- idep:
bioperl
(>= 1.7.4)
- Perl tools for computational molecular biology
-
- idep:
libalgorithm-diff-perl
- module to find differences between files
-
- idep:
libipc-run-perl
- Perl module for running processes
-
- idep:
libio-string-perl
- Emulate IO::File interface for in-core strings
-
- idep:
libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
-
- idep:
libfile-sort-perl
- module to sort a file or merge sort multiple files
-
- idep:
libtest-most-perl
- Perl module with the most commonly needed test functions and features
-
- idep:
libarray-compare-perl
- Perl module to easily compare arrays
-
- idep:
libtree-dagnode-perl
- Perl (super)class for representing nodes in a tree
-
- idep:
libbio-cluster-perl
- BioPerl cluster modules
-
- idep:
libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
-
- idep:
libconfig-any-perl
- module to load configuration from different file formats
-
- idep:
libbio-tools-run-alignment-clustalw-perl
[any-amd64]
- Bioperl interface to Clustal W
-
- idep:
libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
-
- idep:
libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
-
- idep:
amap-align
- Protein multiple alignment by sequence annealing
-
- idep:
bedtools
[any-amd64]
- suite of utilities for comparing genomic features
-
- idep:
bedtools-test
- test data for the bedtools package
-
- idep:
ncbi-blast+-legacy
- NCBI Blast legacy call script
-
- idep:
clustalw
[any-amd64]
- global multiple nucleotide or peptide sequence alignment
-
- idep:
emboss
[any-amd64 arm64 mips64el ppc64el riscv64]
- European molecular biology open software suite
-
- idep:
exonerate
- generic tool for pairwise sequence comparison
-
- idep:
hmmer
[any-amd64 any-i386 powerpc ppc64]
- profile hidden Markov models for protein sequence analysis
-
- idep:
hyphy-pt
- Hypothesis testing using Phylogenies (pthreads version)
- or
hyphy-mpi
[any-amd64]
- Hypothesis testing using Phylogenies (MPI version)
-
- idep:
infernal
[any-amd64 any-i386]
- inference of RNA secondary structural alignments
-
- idep:
kalign
- Global and progressive multiple sequence alignment
-
- idep:
mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- idep:
muscle
- Multiple alignment program of protein sequences
-
- idep:
ncoils
- coiled coil secondary structure prediction
-
- idep:
phyml
- Phylogenetic estimation using Maximum Likelihood
-
- idep:
primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- idep:
probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- idep:
python3-pybedtools
[any-amd64]
- Python 3 wrapper around BEDTools for bioinformatics work
-
- idep:
raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- idep:
samtools
[any-amd64]
- processing sequence alignments in SAM, BAM and CRAM formats
-
- idep:
sim4
- tool for aligning cDNA and genomic DNA
-
- idep:
tigr-glimmer
[any-amd64 arm64 mips64el ppc64el riscv64]
- Gene detection in archea and bacteria
-
- idep:
wise
- comparison of biopolymers, like DNA and protein sequences
-
- idep:
fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- idep:
lagan
- highly parametrizable pairwise global genome sequence aligner
-
- idep:
pal2nal
- converts proteins to genomic DNA alignment
-
- idep:
pftools
[any-amd64]
- build and search protein and DNA generalized profiles
-
- idep:
libwww-perl
- simple and consistent interface to the world-wide web
