Package: ampliconnoise (1.29-11) [debports]
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removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:
Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
Other Packages Related to ampliconnoise
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
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- dep: libgslcblas0 (>= 2.7.1)
- GNU Scientific Library (GSL) -- blas library package
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- dep: libopenmpi3t64 (>= 4.1.6)
- high performance message passing library -- shared library
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- dep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: openmpi-bin
- high performance message passing library -- binaries
Download ampliconnoise
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| sparc64 (unofficial port) | 1,065.6 kB | 14,888.0 kB | [list of files] |