[ Source: libedlib ]
Package: libedlib1 (1.2.7-5)
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- Homepage [github.com]
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library for sequence alignment using edit distance
A lightweight and super fast C/C++ library for sequence alignment using edit distance.
Calculating edit distance of two strings is as simple as:
edlibAlign("hello", 5, "world!", 6, edlibDefaultAlignConfig()).editDistance;Features
* Calculates edit distance (Levehnstein distance). * It can find optimal alignment path (instructions how to transform first sequence into the second sequence). * It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path. * Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios. * You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides. * It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory. * Super fast thanks to Myers's bit-vector algorithm.
This package contains the shared library.
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- dep: libc6 (>= 2.2) [hppa]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
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Download libedlib1
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
alpha (unofficial port) | 16.0 kB | 83.0 kB | [list of files] |
amd64 | 17.2 kB | 50.0 kB | [list of files] |
arm64 | 16.2 kB | 82.0 kB | [list of files] |
armel | 14.2 kB | 42.0 kB | [list of files] |
armhf | 14.3 kB | 34.0 kB | [list of files] |
hppa (unofficial port) | 16.9 kB | 42.0 kB | [list of files] |
i386 | 16.7 kB | 46.0 kB | [list of files] |
ia64 (unofficial port) | 19.8 kB | 62.0 kB | [list of files] |
m68k (unofficial port) | 16.5 kB | 50.0 kB | [list of files] |
mips64el | 16.7 kB | 83.0 kB | [list of files] |
ppc64 (unofficial port) | 18.1 kB | 82.0 kB | [list of files] |
ppc64el | 20.0 kB | 82.0 kB | [list of files] |
riscv64 | 16.2 kB | 38.0 kB | [list of files] |
s390x | 19.5 kB | 54.0 kB | [list of files] |
sh4 (unofficial port) | 17.8 kB | 82.0 kB | [list of files] |
sparc64 (unofficial port) | 14.6 kB | 1,043.0 kB | [list of files] |
x32 (unofficial port) | 17.1 kB | 46.0 kB | [list of files] |