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/usr/include/pbseq/LibBlasrConfig.h
/usr/include/pbseq/alignment/MappingMetrics.hpp
/usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp
/usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp
/usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp
/usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
/usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp
/usr/include/pbseq/alignment/algorithms/alignment/GraphPaperImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp
/usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp
/usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
/usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/SWAlign.hpp
/usr/include/pbseq/alignment/algorithms/alignment/SWAlignImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/ScoreMatrices.hpp
/usr/include/pbseq/alignment/algorithms/alignment/StringToScoreMatrix.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSort.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPColumn.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPFragment.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSet.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp
/usr/include/pbseq/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h
/usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/BWTSearchImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpoint.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpointImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/ClusterProbability.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/Coordinate.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/GlobalChain.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/GlobalChainImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValue.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValueImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightor.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISQValueWeightor.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightor.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArray.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTree.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchors.hpp
/usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp
/usr/include/pbseq/alignment/algorithms/compare/CompareStrings.hpp
/usr/include/pbseq/alignment/algorithms/sorting/DifferenceCovers.hpp
/usr/include/pbseq/alignment/algorithms/sorting/Karkkainen.hpp
/usr/include/pbseq/alignment/algorithms/sorting/LightweightSuffixArray.hpp
/usr/include/pbseq/alignment/algorithms/sorting/MultikeyQuicksort.hpp
/usr/include/pbseq/alignment/algorithms/sorting/qsufsort.hpp
/usr/include/pbseq/alignment/bwt/BWT.hpp
/usr/include/pbseq/alignment/bwt/Occ.hpp
/usr/include/pbseq/alignment/bwt/PackedHash.hpp
/usr/include/pbseq/alignment/bwt/Pos.hpp
/usr/include/pbseq/alignment/datastructures/alignment/AlignedPair.h
/usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentContext.hpp
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentGapList.h
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentMap.hpp
/usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp
/usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h
/usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp
/usr/include/pbseq/alignment/datastructures/alignment/CmpIndexedStringTable.h
/usr/include/pbseq/alignment/datastructures/alignment/CmpReadGroupTable.h
/usr/include/pbseq/alignment/datastructures/alignment/CmpRefSeqTable.h
/usr/include/pbseq/alignment/datastructures/alignment/FilterCriteria.hpp
/usr/include/pbseq/alignment/datastructures/alignment/Path.h
/usr/include/pbseq/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp
/usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp
/usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp
/usr/include/pbseq/alignment/datastructures/alignmentset/SAMQVConversion.hpp
/usr/include/pbseq/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp
/usr/include/pbseq/alignment/datastructures/anchoring/AnchorParameters.hpp
/usr/include/pbseq/alignment/datastructures/anchoring/ClusterList.hpp
/usr/include/pbseq/alignment/datastructures/anchoring/MatchPos.hpp
/usr/include/pbseq/alignment/datastructures/anchoring/WeightedInterval.hpp
/usr/include/pbseq/alignment/files/BaseSequenceIO.hpp
/usr/include/pbseq/alignment/files/CCSIterator.hpp
/usr/include/pbseq/alignment/files/FragmentCCSIterator.hpp
/usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp
/usr/include/pbseq/alignment/files/ReaderAgglomerateImpl.hpp
/usr/include/pbseq/alignment/format/BAMPrinter.hpp
/usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp
/usr/include/pbseq/alignment/format/CompareSequencesPrinter.hpp
/usr/include/pbseq/alignment/format/CompareSequencesPrinterImpl.hpp
/usr/include/pbseq/alignment/format/IntervalPrinter.hpp
/usr/include/pbseq/alignment/format/SAMHeaderPrinter.hpp
/usr/include/pbseq/alignment/format/SAMPrinter.hpp
/usr/include/pbseq/alignment/format/SAMPrinterImpl.hpp
/usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp
/usr/include/pbseq/alignment/format/SummaryPrinter.hpp
/usr/include/pbseq/alignment/format/VulgarPrinter.hpp
/usr/include/pbseq/alignment/format/XMLPrinter.hpp
/usr/include/pbseq/alignment/ipc/SharedMemoryAllocator.hpp
/usr/include/pbseq/alignment/query/PbiFilterZmwGroupQuery.h
/usr/include/pbseq/alignment/query/SequentialZmwGroupQuery.h
/usr/include/pbseq/alignment/qvs/QualityValueProfile.hpp
/usr/include/pbseq/alignment/simulator/CDFMap.hpp
/usr/include/pbseq/alignment/simulator/ContextOutputList.hpp
/usr/include/pbseq/alignment/simulator/ContextSample.hpp
/usr/include/pbseq/alignment/simulator/ContextSet.hpp
/usr/include/pbseq/alignment/simulator/LengthHistogram.hpp
/usr/include/pbseq/alignment/simulator/OutputList.hpp
/usr/include/pbseq/alignment/simulator/OutputSample.hpp
/usr/include/pbseq/alignment/simulator/OutputSampleList.hpp
/usr/include/pbseq/alignment/simulator/OutputSampleListSet.hpp
/usr/include/pbseq/alignment/simulator/QualitySample.hpp
/usr/include/pbseq/alignment/statistics/AnchorDistributionTable.hpp
/usr/include/pbseq/alignment/statistics/LookupAnchorDistribution.hpp
/usr/include/pbseq/alignment/statistics/StatUtils.hpp
/usr/include/pbseq/alignment/statistics/StatUtilsImpl.hpp
/usr/include/pbseq/alignment/statistics/VarianceAccumulator.hpp
/usr/include/pbseq/alignment/statistics/VarianceAccumulatorImpl.hpp
/usr/include/pbseq/alignment/statistics/cdfs.hpp
/usr/include/pbseq/alignment/statistics/pdfs.hpp
/usr/include/pbseq/alignment/suffixarray/LCPTable.hpp
/usr/include/pbseq/alignment/suffixarray/SharedSuffixArray.hpp
/usr/include/pbseq/alignment/suffixarray/SuffixArray.hpp
/usr/include/pbseq/alignment/suffixarray/SuffixArrayTypes.hpp
/usr/include/pbseq/alignment/suffixarray/ssort.hpp
/usr/include/pbseq/alignment/tuples/BaseTuple.hpp
/usr/include/pbseq/alignment/tuples/CompressedDNATuple.hpp
/usr/include/pbseq/alignment/tuples/CountedTuple.h
/usr/include/pbseq/alignment/tuples/DNATuple.hpp
/usr/include/pbseq/alignment/tuples/DNATupleImpl.hpp
/usr/include/pbseq/alignment/tuples/DNATupleList.h
/usr/include/pbseq/alignment/tuples/HashedTupleList.hpp
/usr/include/pbseq/alignment/tuples/HashedTupleListImpl.hpp
/usr/include/pbseq/alignment/tuples/TupleCountTable.hpp
/usr/include/pbseq/alignment/tuples/TupleCountTableImpl.hpp
/usr/include/pbseq/alignment/tuples/TupleList.hpp
/usr/include/pbseq/alignment/tuples/TupleListImpl.hpp
/usr/include/pbseq/alignment/tuples/TupleMask.h
/usr/include/pbseq/alignment/tuples/TupleMatching.hpp
/usr/include/pbseq/alignment/tuples/TupleMatchingImpl.hpp
/usr/include/pbseq/alignment/tuples/TupleMetrics.hpp
/usr/include/pbseq/alignment/tuples/TupleOperations.h
/usr/include/pbseq/alignment/tuples/TupleTranslations.h
/usr/include/pbseq/alignment/tuples/tuple.h
/usr/include/pbseq/alignment/utils/FileOfFileNames.hpp
/usr/include/pbseq/alignment/utils/FileUtils.hpp
/usr/include/pbseq/alignment/utils/LogUtils.hpp
/usr/include/pbseq/alignment/utils/PhredUtils.hpp
/usr/include/pbseq/alignment/utils/RangeUtils.hpp
/usr/include/pbseq/alignment/utils/RegionUtils.hpp
/usr/include/pbseq/alignment/utils/RegionUtilsImpl.hpp
/usr/include/pbseq/alignment/utils/SimpleXMLUtils.hpp
/usr/include/pbseq/libblasr/alignment/MappingMetrics.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/AffineGuidedAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/AffineKBandAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/AlignmentFormats.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/AlignmentUtils.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/BaseScoreFunction.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/ExtendAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/FullQVAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/GraphPaper.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/GraphPaperImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/GuidedAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/IDSScoreFunction.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/KBandAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/OneGapAlignment.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/SDPAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/SDPAlignImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/SWAlign.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/SWAlignImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/ScoreMatrices.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/StringToScoreMatrix.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/FragmentSort.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPColumn.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPFragment.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPSet.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BWTSearch.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BWTSearchImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BasicEndpoint.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BasicEndpointImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/ClusterProbability.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/Coordinate.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/FindMaxInterval.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/GlobalChain.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/GlobalChainImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValue.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValueImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValueWeightor.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISQValueWeightor.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISSizeWeightor.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/MapBySuffixArray.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/PrioritySearchTree.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/ScoreAnchors.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/compare/CompareStrings.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/sorting/DifferenceCovers.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/sorting/Karkkainen.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/sorting/LightweightSuffixArray.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/sorting/MultikeyQuicksort.hpp
/usr/include/pbseq/libblasr/alignment/algorithms/sorting/qsufsort.hpp
/usr/include/pbseq/libblasr/alignment/bwt/BWT.hpp
/usr/include/pbseq/libblasr/alignment/bwt/Occ.hpp
/usr/include/pbseq/libblasr/alignment/bwt/PackedHash.hpp
/usr/include/pbseq/libblasr/alignment/bwt/Pos.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignedPair.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/Alignment.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentCandidate.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentContext.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentGapList.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentMap.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentStats.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/ByteAlignment.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpFile.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpIndexedStringTable.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpReadGroupTable.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpRefSeqTable.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/FilterCriteria.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/Path.h
/usr/include/pbseq/libblasr/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/SAMQVConversion.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/anchoring/AnchorParameters.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/anchoring/ClusterList.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/anchoring/MatchPos.hpp
/usr/include/pbseq/libblasr/alignment/datastructures/anchoring/WeightedInterval.hpp
/usr/include/pbseq/libblasr/alignment/files/BaseSequenceIO.hpp
/usr/include/pbseq/libblasr/alignment/files/CCSIterator.hpp
/usr/include/pbseq/libblasr/alignment/files/FragmentCCSIterator.hpp
/usr/include/pbseq/libblasr/alignment/files/ReaderAgglomerate.hpp
/usr/include/pbseq/libblasr/alignment/files/ReaderAgglomerateImpl.hpp
/usr/include/pbseq/libblasr/alignment/format/BAMPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/BAMPrinterImpl.hpp
/usr/include/pbseq/libblasr/alignment/format/CompareSequencesPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/CompareSequencesPrinterImpl.hpp
/usr/include/pbseq/libblasr/alignment/format/IntervalPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/SAMHeaderPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/SAMPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/SAMPrinterImpl.hpp
/usr/include/pbseq/libblasr/alignment/format/StickAlignmentPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/SummaryPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/VulgarPrinter.hpp
/usr/include/pbseq/libblasr/alignment/format/XMLPrinter.hpp
/usr/include/pbseq/libblasr/alignment/ipc/SharedMemoryAllocator.hpp
/usr/include/pbseq/libblasr/alignment/query/PbiFilterZmwGroupQuery.h
/usr/include/pbseq/libblasr/alignment/query/SequentialZmwGroupQuery.h
/usr/include/pbseq/libblasr/alignment/qvs/QualityValueProfile.hpp
/usr/include/pbseq/libblasr/alignment/simulator/CDFMap.hpp
/usr/include/pbseq/libblasr/alignment/simulator/ContextOutputList.hpp
/usr/include/pbseq/libblasr/alignment/simulator/ContextSample.hpp
/usr/include/pbseq/libblasr/alignment/simulator/ContextSet.hpp
/usr/include/pbseq/libblasr/alignment/simulator/LengthHistogram.hpp
/usr/include/pbseq/libblasr/alignment/simulator/OutputList.hpp
/usr/include/pbseq/libblasr/alignment/simulator/OutputSample.hpp
/usr/include/pbseq/libblasr/alignment/simulator/OutputSampleList.hpp
/usr/include/pbseq/libblasr/alignment/simulator/OutputSampleListSet.hpp
/usr/include/pbseq/libblasr/alignment/simulator/QualitySample.hpp
/usr/include/pbseq/libblasr/alignment/statistics/AnchorDistributionTable.hpp
/usr/include/pbseq/libblasr/alignment/statistics/LookupAnchorDistribution.hpp
/usr/include/pbseq/libblasr/alignment/statistics/StatUtils.hpp
/usr/include/pbseq/libblasr/alignment/statistics/StatUtilsImpl.hpp
/usr/include/pbseq/libblasr/alignment/statistics/VarianceAccumulator.hpp
/usr/include/pbseq/libblasr/alignment/statistics/VarianceAccumulatorImpl.hpp
/usr/include/pbseq/libblasr/alignment/statistics/cdfs.hpp
/usr/include/pbseq/libblasr/alignment/statistics/pdfs.hpp
/usr/include/pbseq/libblasr/alignment/suffixarray/LCPTable.hpp
/usr/include/pbseq/libblasr/alignment/suffixarray/SharedSuffixArray.hpp
/usr/include/pbseq/libblasr/alignment/suffixarray/SuffixArray.hpp
/usr/include/pbseq/libblasr/alignment/suffixarray/SuffixArrayTypes.hpp
/usr/include/pbseq/libblasr/alignment/suffixarray/ssort.hpp
/usr/include/pbseq/libblasr/alignment/tuples/BaseTuple.hpp
/usr/include/pbseq/libblasr/alignment/tuples/CompressedDNATuple.hpp
/usr/include/pbseq/libblasr/alignment/tuples/CountedTuple.h
/usr/include/pbseq/libblasr/alignment/tuples/DNATuple.hpp
/usr/include/pbseq/libblasr/alignment/tuples/DNATupleImpl.hpp
/usr/include/pbseq/libblasr/alignment/tuples/DNATupleList.h
/usr/include/pbseq/libblasr/alignment/tuples/HashedTupleList.hpp
/usr/include/pbseq/libblasr/alignment/tuples/HashedTupleListImpl.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleCountTable.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleCountTableImpl.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleList.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleListImpl.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleMask.h
/usr/include/pbseq/libblasr/alignment/tuples/TupleMatching.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleMatchingImpl.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleMetrics.hpp
/usr/include/pbseq/libblasr/alignment/tuples/TupleOperations.h
/usr/include/pbseq/libblasr/alignment/tuples/TupleTranslations.h
/usr/include/pbseq/libblasr/alignment/tuples/tuple.h
/usr/include/pbseq/libblasr/alignment/utils/FileOfFileNames.hpp
/usr/include/pbseq/libblasr/alignment/utils/FileUtils.hpp
/usr/include/pbseq/libblasr/alignment/utils/LogUtils.hpp
/usr/include/pbseq/libblasr/alignment/utils/PhredUtils.hpp
/usr/include/pbseq/libblasr/alignment/utils/RangeUtils.hpp
/usr/include/pbseq/libblasr/alignment/utils/RegionUtils.hpp
/usr/include/pbseq/libblasr/alignment/utils/RegionUtilsImpl.hpp
/usr/include/pbseq/libblasr/alignment/utils/SimpleXMLUtils.hpp
/usr/include/pbseq/libblasr/hdf/BufferedHDF2DArray.hpp
/usr/include/pbseq/libblasr/hdf/BufferedHDF2DArrayImpl.hpp
/usr/include/pbseq/libblasr/hdf/BufferedHDFArray.hpp
/usr/include/pbseq/libblasr/hdf/BufferedHDFArrayImpl.hpp
/usr/include/pbseq/libblasr/hdf/DatasetCollection.hpp
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