Package: cd-hit (4.8.1-3)

Links for cd-hit

Debian Resources:

Download Source Package cd-hit:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Tim Booth (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [weizhongli-lab.org]

Similar packages:

suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, use::comparing, Works with: Biological Sequence

Other Packages Related to cd-hit

depends

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dep: libc6 (>= 2.7)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 4.2)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

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Architecture	Package Size	Installed Size	Files
mipsel	511.1 kB	1,541.0 kB	[list of files]