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[ Source: r-bioc-megadepth  ]

Package: r-bioc-megadepth (1.8.0+ds-1)

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BioCOnductor BigWig and BAM related utilities

This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.

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Architecture Package Size Installed Size Files
all 86.3 kB182.0 kB [list of files]