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/usr/bin/annlib.python
/usr/bin/annlib.show_build_path
/usr/bin/annlib.show_dist_paths
/usr/bin/boost.gcd
/usr/bin/boost.lcm
/usr/bin/boost.python
/usr/bin/boost.show_build_path
/usr/bin/boost.show_dist_paths
/usr/bin/boost_adaptbx.divide_by_zero
/usr/bin/boost_adaptbx.double_overflow
/usr/bin/boost_adaptbx.inexact
/usr/bin/boost_adaptbx.int_overflow
/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals
/usr/bin/boost_adaptbx.segmentation_fault
/usr/bin/boost_adaptbx.show_environ_usage
/usr/bin/boost_adaptbx.show_platform_info
/usr/bin/cbf.dump
/usr/bin/cbflib.python
/usr/bin/cbflib.show_build_path
/usr/bin/cbflib.show_dist_paths
/usr/bin/cbflib.tst_memory
/usr/bin/ccp4io.python
/usr/bin/ccp4io.show_build_path
/usr/bin/ccp4io.show_dist_paths
/usr/bin/cctbx.HKLinfo
/usr/bin/cctbx.HKLviewer
/usr/bin/cctbx.brehm_diederichs
/usr/bin/cctbx.cod_select_and_pickle
/usr/bin/cctbx.convert_ccp4_symop_lib
/usr/bin/cctbx.data_viewer
/usr/bin/cctbx.development.ntc_validation
/usr/bin/cctbx.diffuse
/usr/bin/cctbx.eltbx.show_fp_fdp
/usr/bin/cctbx.euclidean_model_matching
/usr/bin/cctbx.find_distances
/usr/bin/cctbx.getting_started
/usr/bin/cctbx.image_viewer
/usr/bin/cctbx.isomorphous_difference_patterson
/usr/bin/cctbx.lattice_symmetry
/usr/bin/cctbx.loggraph
/usr/bin/cctbx.make_install_HKLviewer_ChimeraX
/usr/bin/cctbx.multiplicity_viewer
/usr/bin/cctbx.patterson_map
/usr/bin/cctbx.plot_anomalous_scattering
/usr/bin/cctbx.precession_view
/usr/bin/cctbx.python
/usr/bin/cctbx.show_build_path
/usr/bin/cctbx.show_dist_paths
/usr/bin/cctbx.show_systematic_absences
/usr/bin/cctbx.space_group_info
/usr/bin/cctbx.structure_factor_timings
/usr/bin/cctbx.subgroups
/usr/bin/cctbx.suitename
/usr/bin/cctbx.sym_equiv_sites
/usr/bin/cctbx.sys_abs_equiv_space_groups
/usr/bin/cctbx.version
/usr/bin/cctbx.visualize_r_factors
/usr/bin/cctbx.wavelength_units
/usr/bin/cctbx.web.install
/usr/bin/cctbx.wxpython
/usr/bin/cctbx.xray_structure.show
/usr/bin/cctbx_blobs
/usr/bin/cctbx_regression.test_nightly
/usr/bin/cma_es.python
/usr/bin/cma_es.show_build_path
/usr/bin/cma_es.show_dist_paths
/usr/bin/crys3d.model_viewer
/usr/bin/crys3d.python
/usr/bin/crys3d.qttbx.view_structure
/usr/bin/crys3d.show_build_path
/usr/bin/crys3d.show_dist_paths
/usr/bin/cxi.image2pickle
/usr/bin/cxi.image_average
/usr/bin/dev.dxtbx.debug_memory
/usr/bin/dev.dxtbx.read_sequence
/usr/bin/distl.find_active_area
/usr/bin/distl.image_viewer
/usr/bin/distl.mp_spotfinder_server_read_file
/usr/bin/distl.signal_strength
/usr/bin/distl.sweep_strength
/usr/bin/distl.thin_client
/usr/bin/dxtbx.depends_on
/usr/bin/dxtbx.detector_superpose
/usr/bin/dxtbx.display_parallax_correction
/usr/bin/dxtbx.dlsnxs2cbf
/usr/bin/dxtbx.image2pickle
/usr/bin/dxtbx.image_average
/usr/bin/dxtbx.install_format
/usr/bin/dxtbx.overload
/usr/bin/dxtbx.plot_detector_models
/usr/bin/dxtbx.print_header
/usr/bin/dxtbx.print_matching_images
/usr/bin/dxtbx.python
/usr/bin/dxtbx.radial_average
/usr/bin/dxtbx.saturation
/usr/bin/dxtbx.show_build_path
/usr/bin/dxtbx.show_dist_paths
/usr/bin/dxtbx.show_mask_info
/usr/bin/dxtbx.show_matching_formats
/usr/bin/dxtbx.show_registry
/usr/bin/fable.cout
/usr/bin/fable.fem_include_search_paths
/usr/bin/fable.insert_write_at_start_of_each_procedure
/usr/bin/fable.python
/usr/bin/fable.read
/usr/bin/fable.show_build_path
/usr/bin/fable.show_calls
/usr/bin/fable.show_dist_paths
/usr/bin/fable.split
/usr/bin/gltbx.python
/usr/bin/gltbx.show_build_path
/usr/bin/gltbx.show_dist_paths
/usr/bin/gltbx.try_imports
/usr/bin/iotbx.blast_pdb
/usr/bin/iotbx.build_phil_cache
/usr/bin/iotbx.cbf_read
/usr/bin/iotbx.cif.as_miller_arrays
/usr/bin/iotbx.cif.as_xray_structure
/usr/bin/iotbx.cif.validate
/usr/bin/iotbx.cif_as_mtz
/usr/bin/iotbx.cif_as_pdb
/usr/bin/iotbx.cns.reflection_reader
/usr/bin/iotbx.cns.sdb_reader
/usr/bin/iotbx.cns.transfer_crystal_symmetry
/usr/bin/iotbx.crystal_symmetry_from_any
/usr/bin/iotbx.dano_as_amplitudes
/usr/bin/iotbx.distance_least_squares
/usr/bin/iotbx.dtrek.to_cns
/usr/bin/iotbx.emma
/usr/bin/iotbx.export_scalepack_unmerged
/usr/bin/iotbx.fetch_pdb
/usr/bin/iotbx.file_reader
/usr/bin/iotbx.french_wilson
/usr/bin/iotbx.get_pubmed_citation
/usr/bin/iotbx.lattice_symmetry
/usr/bin/iotbx.merging_statistics
/usr/bin/iotbx.mtz.dump
/usr/bin/iotbx.pdb.add_conformations
/usr/bin/iotbx.pdb.as_xray_structure
/usr/bin/iotbx.pdb.box_around_molecule
/usr/bin/iotbx.pdb.flip_symmetric_amino_acids
/usr/bin/iotbx.pdb.get_citation
/usr/bin/iotbx.pdb.insert_scale_records
/usr/bin/iotbx.pdb.join_fragment_files
/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits
/usr/bin/iotbx.pdb.print_sequence
/usr/bin/iotbx.pdb.show_connectivity
/usr/bin/iotbx.pdb.sort_atoms
/usr/bin/iotbx.pdb.split_models
/usr/bin/iotbx.pdb.superpose_atoms_by_name
/usr/bin/iotbx.pdb.superpose_centers_of_mass
/usr/bin/iotbx.pdb_as_fasta
/usr/bin/iotbx.pdb_labels_comparison
/usr/bin/iotbx.pdb_labels_diff
/usr/bin/iotbx.pdb_remediator
/usr/bin/iotbx.phil
/usr/bin/iotbx.poscar_as_xray_structure
/usr/bin/iotbx.python
/usr/bin/iotbx.r_free_flags_accumulation
/usr/bin/iotbx.r_free_flags_as_cns
/usr/bin/iotbx.r_free_flags_completion_simple
/usr/bin/iotbx.reflection_file_converter
/usr/bin/iotbx.reflection_file_editor
/usr/bin/iotbx.reflection_file_reader
/usr/bin/iotbx.shelx.as_cif
/usr/bin/iotbx.shelx.as_xray_structure
/usr/bin/iotbx.shelx.dump_as_python
/usr/bin/iotbx.show_build_path
/usr/bin/iotbx.show_dist_paths
/usr/bin/iotbx.show_distances
/usr/bin/iotbx.simple_map_coefficients
/usr/bin/iotbx.split_data_cif
/usr/bin/iotbx.symmetry_search
/usr/bin/iotbx.unique_with_biomt
/usr/bin/iotbx.xplor.map.show_summary
/usr/bin/labelit.png
/usr/bin/libtbx.add_from_future_import_division
/usr/bin/libtbx.analyse_code_comments
/usr/bin/libtbx.any2unix
/usr/bin/libtbx.assert_line_count
/usr/bin/libtbx.assert_not_show_diff
/usr/bin/libtbx.assert_stdin
/usr/bin/libtbx.assert_stdin_contains_strings
/usr/bin/libtbx.assert_stdin_does_not_contain_strings
/usr/bin/libtbx.assert_stdin_ends_with
/usr/bin/libtbx.bash
/usr/bin/libtbx.bibtex
/usr/bin/libtbx.bootstrap
/usr/bin/libtbx.bundle_as_exe
/usr/bin/libtbx.bundle_as_selfx
/usr/bin/libtbx.check_libcpp
/usr/bin/libtbx.chunk
/usr/bin/libtbx.clean_clutter
/usr/bin/libtbx.clear_paths
/usr/bin/libtbx.configure
/usr/bin/libtbx.create_cctbx_bundle_for_installer
/usr/bin/libtbx.create_install_script_bat
/usr/bin/libtbx.create_installer
/usr/bin/libtbx.create_mac_app
/usr/bin/libtbx.create_selfx
/usr/bin/libtbx.create_unzipsfx
/usr/bin/libtbx.create_windows_exe
/usr/bin/libtbx.csh
/usr/bin/libtbx.dtrace
/usr/bin/libtbx.easy_qsub
/usr/bin/libtbx.env_run
/usr/bin/libtbx.epydoc_run
/usr/bin/libtbx.exec
/usr/bin/libtbx.extract_code_from_txt
/usr/bin/libtbx.find_clutter
/usr/bin/libtbx.find_files
/usr/bin/libtbx.find_in_repositories
/usr/bin/libtbx.find_old_style_classes
/usr/bin/libtbx.find_reserved_names
/usr/bin/libtbx.find_under_build
/usr/bin/libtbx.find_untested
/usr/bin/libtbx.find_unused_imports
/usr/bin/libtbx.find_unused_imports_crude
/usr/bin/libtbx.gdb
/usr/bin/libtbx.git_avoid_merges
/usr/bin/libtbx.help
/usr/bin/libtbx.import_all_ext
/usr/bin/libtbx.import_all_python
/usr/bin/libtbx.install
/usr/bin/libtbx.install_conda
/usr/bin/libtbx.latex
/usr/bin/libtbx.line_count
/usr/bin/libtbx.list_files
/usr/bin/libtbx.list_modules
/usr/bin/libtbx.list_source_files_sorted_by_size
/usr/bin/libtbx.make_dist
/usr/bin/libtbx.make_sphinx_html
/usr/bin/libtbx.nequal
/usr/bin/libtbx.parallel_simple
/usr/bin/libtbx.path_utility
/usr/bin/libtbx.pdflatex
/usr/bin/libtbx.phil
/usr/bin/libtbx.prime_factors_of
/usr/bin/libtbx.printenv
/usr/bin/libtbx.py_compile_all
/usr/bin/libtbx.python
/usr/bin/libtbx.raise_exception_for_testing
/usr/bin/libtbx.refresh
/usr/bin/libtbx.remote_processing
/usr/bin/libtbx.remove_tree
/usr/bin/libtbx.run_pickled_function
/usr/bin/libtbx.run_tests_parallel
/usr/bin/libtbx.scons
/usr/bin/libtbx.seconds_since_the_epoch
/usr/bin/libtbx.sge_available_slots
/usr/bin/libtbx.sge_qstat_counts
/usr/bin/libtbx.sh
/usr/bin/libtbx.show_all_on_path
/usr/bin/libtbx.show_bin_path
/usr/bin/libtbx.show_build_options
/usr/bin/libtbx.show_build_path
/usr/bin/libtbx.show_but_no_repr
/usr/bin/libtbx.show_commands
/usr/bin/libtbx.show_date_and_time
/usr/bin/libtbx.show_dist_paths
/usr/bin/libtbx.show_env
/usr/bin/libtbx.show_environ_usage
/usr/bin/libtbx.show_full_command_path
/usr/bin/libtbx.show_host_and_user
/usr/bin/libtbx.show_include_paths
/usr/bin/libtbx.show_lib_path
/usr/bin/libtbx.show_module_dependencies
/usr/bin/libtbx.show_number_of_processors
/usr/bin/libtbx.show_numeric_version
/usr/bin/libtbx.show_numpy_version
/usr/bin/libtbx.show_python_dependencies
/usr/bin/libtbx.show_python_sys_executable
/usr/bin/libtbx.show_pythonpath
/usr/bin/libtbx.show_repository_paths
/usr/bin/libtbx.show_tests
/usr/bin/libtbx.show_variable_names
/usr/bin/libtbx.start_binary_bundle
/usr/bin/libtbx.start_process
/usr/bin/libtbx.tcsh
/usr/bin/libtbx.unpack_in_sources
/usr/bin/libtbx.valgrind
/usr/bin/libtbx.wait_for_file
/usr/bin/mmtbx.afitt
/usr/bin/mmtbx.afitt_fd
/usr/bin/mmtbx.altloc_remediate
/usr/bin/mmtbx.analyze_peptides
/usr/bin/mmtbx.analyze_static_disorder
/usr/bin/mmtbx.anneal_real_space
/usr/bin/mmtbx.apply_ncs_to_ligand
/usr/bin/mmtbx.bfactor_plot
/usr/bin/mmtbx.build_alternate_conformations
/usr/bin/mmtbx.cdl_lookup
/usr/bin/mmtbx.compare_ligands
/usr/bin/mmtbx.compute_map_coefficients
/usr/bin/mmtbx.density_modification
/usr/bin/mmtbx.development.aev
/usr/bin/mmtbx.distance_difference
/usr/bin/mmtbx.dssp
/usr/bin/mmtbx.emringer_score
/usr/bin/mmtbx.estimate_bijvoet_ratio
/usr/bin/mmtbx.extend_sidechains
/usr/bin/mmtbx.fft
/usr/bin/mmtbx.find_peaks_holes
/usr/bin/mmtbx.find_residue_in_pdb
/usr/bin/mmtbx.fix_rama_outliers
/usr/bin/mmtbx.fix_rotamer_outliers
/usr/bin/mmtbx.flipbase
/usr/bin/mmtbx.fmodel_simple
/usr/bin/mmtbx.generate_disorder
/usr/bin/mmtbx.get_related_ensemble
/usr/bin/mmtbx.hydrogenate
/usr/bin/mmtbx.massage_data
/usr/bin/mmtbx.matthews
/usr/bin/mmtbx.model_vs_data
/usr/bin/mmtbx.mon_lib_cif_triage
/usr/bin/mmtbx.monomer_library.comp_as_motif
/usr/bin/mmtbx.mp_geo
/usr/bin/mmtbx.nonbonded_overlaps
/usr/bin/mmtbx.nqh_minimize
/usr/bin/mmtbx.partial_omit_map
/usr/bin/mmtbx.pdb_interpretation
/usr/bin/mmtbx.pdb_statistics
/usr/bin/mmtbx.pdb_view_ad_hoc
/usr/bin/mmtbx.prepare_pdb_deposition
/usr/bin/mmtbx.probe2
/usr/bin/mmtbx.process_predicted_model
/usr/bin/mmtbx.prune_model
/usr/bin/mmtbx.python
/usr/bin/mmtbx.quantum_interface
/usr/bin/mmtbx.rama_z
/usr/bin/mmtbx.rebuild_cablam_cache
/usr/bin/mmtbx.rebuild_rotarama_cache
/usr/bin/mmtbx.reduce2
/usr/bin/mmtbx.refine_anomalous_substructure
/usr/bin/mmtbx.rigid_bond_test
/usr/bin/mmtbx.ringer
/usr/bin/mmtbx.search_pdb_symmetry
/usr/bin/mmtbx.select_best_starting_model
/usr/bin/mmtbx.show_build_path
/usr/bin/mmtbx.show_dist_paths
/usr/bin/mmtbx.show_r_factors_by_shell
/usr/bin/mmtbx.show_suspicious_residues
/usr/bin/mmtbx.simple_build_alt_confs
/usr/bin/mmtbx.simulate_low_res_data
/usr/bin/mmtbx.ss_idealization
/usr/bin/mmtbx.ssm_rmsd_for_chains
/usr/bin/mmtbx.strip_model
/usr/bin/mmtbx.super
/usr/bin/mmtbx.superpose
/usr/bin/mmtbx.table_one
/usr/bin/mmtbx.validate_ions
/usr/bin/mmtbx.validate_ligands
/usr/bin/mmtbx.validate_waters
/usr/bin/mmtbx.validation_summary
/usr/bin/mmtbx.verify_mon_lib_data
/usr/bin/mmtbx.water_screen
/usr/bin/mmtbx.xtriage
/usr/bin/mmtbx.xtriage_gui
/usr/bin/molprobity.cablam
/usr/bin/molprobity.cbetadev
/usr/bin/molprobity.clashscore
/usr/bin/molprobity.kinemage
/usr/bin/molprobity.molprobity
/usr/bin/molprobity.omegalyze
/usr/bin/molprobity.probescore_ligand
/usr/bin/molprobity.ramalyze
/usr/bin/molprobity.rna_validate
/usr/bin/molprobity.rotalyze
/usr/bin/molprobity.suitename
/usr/bin/omptbx.python
/usr/bin/omptbx.show_build_path
/usr/bin/omptbx.show_dist_paths
/usr/bin/phasertng.HKLviewer
/usr/bin/phenix.HKLinfo
/usr/bin/phenix.HKLviewer
/usr/bin/phenix.angle
/usr/bin/phenix.auto_sharpen
/usr/bin/phenix.cablam
/usr/bin/phenix.cablam_idealization
/usr/bin/phenix.cablam_training
/usr/bin/phenix.cablam_validate
/usr/bin/phenix.cbetadev
/usr/bin/phenix.cc_star
/usr/bin/phenix.chains_as_models
/usr/bin/phenix.cif_as_mtz
/usr/bin/phenix.cif_as_pdb
/usr/bin/phenix.clashscore
/usr/bin/phenix.cns_as_mtz
/usr/bin/phenix.comparama
/usr/bin/phenix.compare_datasets
/usr/bin/phenix.csv_as_mtz
/usr/bin/phenix.data_viewer
/usr/bin/phenix.diffuse
/usr/bin/phenix.dynamics
/usr/bin/phenix.emma
/usr/bin/phenix.emringer
/usr/bin/phenix.evalurama
/usr/bin/phenix.example_viewer
/usr/bin/phenix.explore_metric_symmetry
/usr/bin/phenix.f000
/usr/bin/phenix.fab_elbow_angle
/usr/bin/phenix.fake_f_obs
/usr/bin/phenix.feature_enhanced_map
/usr/bin/phenix.fem
/usr/bin/phenix.fest
/usr/bin/phenix.fetch_pdb
/usr/bin/phenix.fft
/usr/bin/phenix.find_peaks_holes
/usr/bin/phenix.find_reticular_twin_laws
/usr/bin/phenix.find_tls_groups
/usr/bin/phenix.fmodel
/usr/bin/phenix.fobs_minus_fobs_map
/usr/bin/phenix.form_factor_query
/usr/bin/phenix.french_wilson
/usr/bin/phenix.geometry_minimization
/usr/bin/phenix.grow_density
/usr/bin/phenix.hbond
/usr/bin/phenix.helix_sheet_recs_as_pdb_files
/usr/bin/phenix.image_viewer
/usr/bin/phenix.kinemage
/usr/bin/phenix.map_box
/usr/bin/phenix.map_comparison
/usr/bin/phenix.map_to_model_histogram
/usr/bin/phenix.map_to_structure_factors
/usr/bin/phenix.map_value_at_point
/usr/bin/phenix.maps
/usr/bin/phenix.mask
/usr/bin/phenix.maximum_entropy_map
/usr/bin/phenix.merging_statistics
/usr/bin/phenix.model_idealization
/usr/bin/phenix.model_map
/usr/bin/phenix.model_model_distances
/usr/bin/phenix.model_vs_map
/usr/bin/phenix.model_vs_sequence
/usr/bin/phenix.models_as_chains
/usr/bin/phenix.molprobity
/usr/bin/phenix.mtz.dump
/usr/bin/phenix.mtz2map
/usr/bin/phenix.mtz_as_cif
/usr/bin/phenix.omegalyze
/usr/bin/phenix.pdb.b_factor_stats
/usr/bin/phenix.pdb.biomt_reconstruction
/usr/bin/phenix.pdb.hierarchy
/usr/bin/phenix.pdb.mtrix_reconstruction
/usr/bin/phenix.pdb_as_cif
/usr/bin/phenix.pdb_atom_selection
/usr/bin/phenix.pdb_editor
/usr/bin/phenix.pdb_interpretation
/usr/bin/phenix.pdbtools
/usr/bin/phenix.perigee
/usr/bin/phenix.plan_sad_experiment
/usr/bin/phenix.polder
/usr/bin/phenix.process_predicted_model
/usr/bin/phenix.r_factor_statistics
/usr/bin/phenix.rama_z
/usr/bin/phenix.ramalyze
/usr/bin/phenix.rank_scale_map
/usr/bin/phenix.real_space_correlation
/usr/bin/phenix.real_space_diff_map
/usr/bin/phenix.reciprocal_space_arrays
/usr/bin/phenix.reflection_file_converter
/usr/bin/phenix.reflection_statistics
/usr/bin/phenix.reindex
/usr/bin/phenix.remove_outliers
/usr/bin/phenix.resolution
/usr/bin/phenix.rna_validate
/usr/bin/phenix.rotalyze
/usr/bin/phenix.secondary_structure_restraints
/usr/bin/phenix.secondary_structure_validation
/usr/bin/phenix.segment_and_split_map
/usr/bin/phenix.sisa
/usr/bin/phenix.sort_hetatms
/usr/bin/phenix.suitename
/usr/bin/phenix.tls
/usr/bin/phenix.tls_analysis
/usr/bin/phenix.tls_as_xyz
/usr/bin/phenix.twin_map_utils
/usr/bin/phenix.unique_with_biomt
/usr/bin/phenix.validate_H
/usr/bin/phenix.xmanip
/usr/bin/phenix.xtriage
/usr/bin/rstbx.index
/usr/bin/rstbx.python
/usr/bin/rstbx.show_build_path
/usr/bin/rstbx.show_dist_paths
/usr/bin/rstbx.simage.create
/usr/bin/rstbx.simage.explore_completeness
/usr/bin/rstbx.simage.solver
/usr/bin/rstbx.simage.wx_display
/usr/bin/samosa.join
/usr/bin/samosa.scale
/usr/bin/scitbx.apply_tapenade_hints
/usr/bin/scitbx.generate_error_h
/usr/bin/scitbx.histogram
/usr/bin/scitbx.python
/usr/bin/scitbx.show_build_path
/usr/bin/scitbx.show_dist_paths
/usr/bin/scitbx.show_exp_times
/usr/bin/scitbx.show_sizes
/usr/bin/scitbx.unicode_examples
/usr/bin/smtbx.absolute_structure
/usr/bin/smtbx.anom_refine
/usr/bin/smtbx.benchmark_refinement
/usr/bin/smtbx.masks
/usr/bin/smtbx.python
/usr/bin/smtbx.refine
/usr/bin/smtbx.show_build_path
/usr/bin/smtbx.show_dist_paths
/usr/bin/sphinx.build
/usr/bin/spotfinder.python
/usr/bin/spotfinder.show_build_path
/usr/bin/spotfinder.show_dist_paths
/usr/bin/wxtbx.anomalous_differences_histogram
/usr/bin/wxtbx.inspect_r_free_flags
/usr/bin/wxtbx.plan_sad_experiment
/usr/bin/wxtbx.python
/usr/bin/wxtbx.show_build_path
/usr/bin/wxtbx.show_dist_paths
/usr/bin/wxtbx.show_file_info
/usr/bin/wxtbx.xtriage
/usr/lib/cctbx/python3.11/boost_adaptbx/tests/tst_optional_copy
/usr/lib/cctbx/python3.11/iotbx/pdb/hybrid_36_fem
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