Quellcode-Paket: pigx-rnaseq (0.1.0-1.1)
Links für pigx-rnaseq
Debian-Ressourcen:
Betreuer:
Externe Ressourcen:
Die folgenden Binärpakete werden aus diesem Quellcode-Paket gebaut:
- pigx-rnaseq
- pipeline for checkpointed and distributed RNA-seq analyses
Andere Pakete mit Bezug zu pigx-rnaseq
-
- adep:
debhelper-compat
(= 13)
- Paket nicht verfügbar
-
- adep:
autoconf-archive
- Makro-Archiv für Autoconf
-
- adep:
fastp
- Ultra-fast all-in-one FASTQ preprocessor
-
- adep:
fastqc
- quality control for high throughput sequence data
-
- adep:
hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- adep:
libjs-jquery-datatables
- jQuery-Plug-in, das aus verschiedenen Datenquellen schöne Tabellen erstellt
-
- adep:
libjs-jquery-tablesorter
- jQuery-Plungin für flexible clientseitige Sortierung von Tabellen
-
- adep:
megadepth
- computes coverage from BigWig and BAM sequencing files
-
- adep:
multiqc
- output integration for RNA sequencing across tools and samples
-
- adep:
python3-all
- package depending on all supported Python 3 runtime versions
-
- adep:
python3-deeptools
- platform for exploring biological deep-sequencing data
-
- adep:
python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
-
- adep:
r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- adep:
r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- adep:
r-bioc-summarizedexperiment
- BioConductor assay container
-
- adep:
r-bioc-tximport
- transcript-level estimates for biological sequencing
-
- adep:
r-cran-corrplot
- Visualization of a Correlation Matrix
-
- adep:
r-cran-crosstalk
- GNU R - Interaktivität zwischen HTML-Widgets
-
- adep:
r-cran-data.table
- GNU R - Erweiterung von data.frame()
-
- adep:
r-cran-dt
(>= 0.15+dfsg-2)
- GNU R wrapper of the JavaScript library 'DataTables'
-
- adep:
r-cran-ggplot2
- Implementierung der »Grammar of Graphics«
-
- adep:
r-cran-ggrepel
- auto-position non-overlapping text labels in plots
-
- adep:
r-cran-gprofiler2
- Interface to the 'g:Profiler' Toolset
-
- adep:
r-cran-ggpubr
- GNU R ggplot2 based publication ready plots
-
- adep:
r-cran-locfit
- GNU R local regression, likelihood and density estimation
-
- adep:
r-cran-pheatmap
- GNU R package to create pretty heatmaps
-
- adep:
r-cran-plotly
- create interactive web graphics via 'plotly.js' in GNU R
-
- adep:
r-cran-reshape2
- Flexibly reshape data: a reboot of the reshape package
-
- adep:
r-cran-rjson
- GNU R package for converting between R and JSON objects
-
- adep:
r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
-
- adep:
r-cran-rmarkdown
- Konvertierung von R-Markdown-Dokumenten in verschiedene Formate
-
- adep:
r-cran-scales
- Skalierungsfunktionen zur Visualisierung
-
- adep:
salmon
- wicked-fast transcript quantification from RNA-seq data
-
- adep:
samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- adep:
snakemake
- pythonic workflow management system
-
- adep:
trim-galore
- automate quality and adapter trimming for DNA sequencing
