Paket: r-bioc-rgsepd (1.34.0-1)

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Homepage [bioconductor.org]

GNU R gene set enrichment / projection displays

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

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dep: r-api-4.0

virtuelles Paket, bereitgestellt durch r-base-core
dep: r-api-bioc-3.18

virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
dep: r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
dep: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
dep: r-bioc-go.db

annotation maps describing the entire Gene Ontology
dep: r-bioc-goseq (>= 1.28)

GNU R gene ontology analyser for RNA-seq and other length biased data
dep: r-bioc-org.hs.eg.db

genome-wide annotation for Human
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-gplots

GNU R package with tools for plotting data by Greg Warnes et al

sug: r-bioc-biocgenerics

generic functions for Bioconductor
sug: r-cran-boot

GNU R-Paket für bootstrapping-Funktionen von Davison und Hinkley
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-xtable

GNU R - Daten in LaTeX- und HTML-Tabellen zwingen

r-bioc-rgsepd herunterladen

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