[ sid ]
[ Quellcode: snippy ]
Paket: snippy (4.6.0+dfsg-4)
Links für snippy
Debian-Ressourcen:
Quellcode-Paket snippy herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
rapid haploid variant calling and core genome alignment
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).
Andere Pakete mit Bezug zu snippy
|
|
|
|
-
- dep: any2fasta
- convert various sequence formats to FASTA
-
- dep: bcftools
- Aufruf und Manipulation genomischer Varianten von VCF/BCF-Dateien
-
- dep: bedtools
- Hilfswerkzeugsammlung zum Vergleich genomischer Merkmale
-
- dep: bwa
- Burrows-Wheeler Aligner
-
- dep: freebayes (>= 1.3.6-2)
- Bayesian haplotype-based polymorphism discovery and genotyping
-
- dep: libbio-perl-perl
- Grundlegende Perl-Module von BioPerl
-
- dep: libvcflib-tools
- C++ library for parsing and manipulating VCF files (tools)
-
- dep: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
-
- dep: parallel
- build and execute command lines from standard input in parallel
-
- dep: perl
- Larry Wall's Practical Extraction und Report Language
-
- dep: samclip
- filter SAM file for soft and hard clipped alignments
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
-
- dep: snp-sites
- Binary code for the package snp-sites
-
- dep: snpeff
- genetic variant annotation and effect prediction toolbox - tool
-
- dep: vt
- toolset for short variant discovery in genetic sequence data
snippy herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 26,2 kB | 100,0 kB | [Liste der Dateien] |