Paket: r-bioc-tcgabiolinks (2.30.0+dfsg-1)

Links für r-bioc-tcgabiolinks

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Homepage [bioconductor.org]

GNU R/Bioconductor package for integrative analysis with GDC data

The aim of TCGAbiolinks is:

 1) facilitate the GDC open-access data retrieval,
 2) prepare the data using the appropriate pre-processing strategies,
 3) provide the means to carry out different standard analyses and
 4) to easily reproduce earlier research results.

In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Andere Pakete mit Bezug zu r-bioc-tcgabiolinks

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dep: r-api-4.0

virtuelles Paket, bereitgestellt durch r-base-core
dep: r-api-bioc-3.18

virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
dep: r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.4.0)

BioConductor assay container
dep: r-bioc-tcgabiolinksgui.data (>= 1.15.1)

Data for the TCGAbiolinksGUI package
dep: r-cran-data.table

GNU R - Erweiterung von data.frame()
dep: r-cran-downloader (>= 0.4)

GNU R package for downloading files over http and https
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-ggplot2

Implementierung der »Grammar of Graphics«
dep: r-cran-httr (>= 1.2.1)

GNU R tools for working with URLs and HTTP
dep: r-cran-jsonlite (>= 1.0.0)

Robust, High Performance JSON Parser and Generator for R
dep: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-purrr

GNU R functional programming tools
dep: r-cran-r.utils

GNU R various programming utilities
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-rvest (>= 0.3.0)

Easily Harvest (Scrape) Web Pages
dep: r-cran-stringr (>= 1.0.0)

Erleichtert die Arbeit mit Strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr

GNU R package to easily tidy data
dep: r-cran-xml (>= 3.98.0)

GNU R package for XML parsing and generation
dep: r-cran-xml2

GNU R XML parser

sug: r-bioc-affy

BioConductor methods for Affymetrix Oligonucleotide Arrays
sug: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-complexheatmap

make complex heatmaps using GNU R
sug: r-bioc-consensusclusterplus

GNU R determining cluster count and membership
sug: r-bioc-edaseq

GNU R exploratory data analysis and normalization for RNA-Seq
sug: r-bioc-edger

Empirische Analyse von digitalen Genexpressionsdaten mit R
sug: r-bioc-experimenthub

BioConductor client to access ExperimentHub resources
sug: r-bioc-genefilter

methods for filtering genes from microarray experiments
sug: r-bioc-limma

linear models for microarray data
sug: r-bioc-sva

GNU R Surrogate Variable Analysis
sug: r-cran-circlize

Circular Visualization
sug: r-cran-devtools

Tools to Make Developing R Packages Easier
sug: r-cran-doparallel

GNU R foreach parallel adaptor for the parallel package
sug: r-cran-ggrepel (>= 0.6.3)

auto-position non-overlapping text labels in plots
sug: r-cran-gridextra

GNU R: Erweiterungen für das grid-Paket
sug: r-cran-igraph

GNU R network analysis and visualization
sug: r-cran-jpeg

Read and write JPEG images
sug: r-cran-parmigene

Parallel Mutual Information to establish Gene Networks
sug: r-cran-png

GNU R package to read and write PNG images
sug: r-cran-rmarkdown

Konvertierung von R-Markdown-Dokumenten in verschiedene Formate
sug: r-cran-scales

Skalierungsfunktionen zur Visualisierung
sug: r-cran-seurat

Tools for Single Cell Genomics
sug: r-cran-survival

GNU-R-Paket für Ereigniszeitanalysen
sug: r-cran-survminer

GNU R drawing survival curves using 'ggplot2'
sug: r-cran-testthat

GNU R testsuite

r-bioc-tcgabiolinks herunterladen

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