[ Quellcode: r-bioc-tcgabiolinks ]
Paket: r-bioc-tcgabiolinks (2.32.0+dfsg-1)
Links für r-bioc-tcgabiolinks
Debian-Ressourcen:
Quellcode-Paket r-bioc-tcgabiolinks herunterladen:
- [r-bioc-tcgabiolinks_2.32.0+dfsg-1.dsc]
- [r-bioc-tcgabiolinks_2.32.0+dfsg.orig.tar.xz]
- [r-bioc-tcgabiolinks_2.32.0+dfsg-1.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [bioconductor.org]
Ähnliche Pakete:
GNU R/Bioconductor package for integrative analysis with GDC data
The aim of TCGAbiolinks is:
1) facilitate the GDC open-access data retrieval, 2) prepare the data using the appropriate pre-processing strategies, 3) provide the means to carry out different standard analyses and 4) to easily reproduce earlier research results.In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.
Andere Pakete mit Bezug zu r-bioc-tcgabiolinks
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- dep: r-api-4.0
- virtuelles Paket, bereitgestellt durch r-base-core
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- dep: r-api-bioc-3.19
- virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
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- dep: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.4.0)
- BioConductor assay container
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- dep: r-bioc-tcgabiolinksgui.data (>= 1.15.1)
- Data for the TCGAbiolinksGUI package
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- dep: r-cran-data.table
- GNU R - Erweiterung von data.frame()
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- dep: r-cran-downloader (>= 0.4)
- GNU R package for downloading files over http and https
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- dep: r-cran-dplyr
- GNU R grammar of data manipulation
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- dep: r-cran-ggplot2
- Implementierung der »Grammar of Graphics«
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- dep: r-cran-httr (>= 1.2.1)
- GNU R tools for working with URLs and HTTP
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- dep: r-cran-jsonlite (>= 1.0.0)
- Robust, High Performance JSON Parser and Generator for R
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- dep: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- dep: r-cran-plyr
- tools for splitting, applying and combining data
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- dep: r-cran-purrr
- GNU R functional programming tools
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- dep: r-cran-r.utils
- GNU R various programming utilities
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: r-cran-rvest (>= 0.3.0)
- Easily Harvest (Scrape) Web Pages
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- dep: r-cran-stringr (>= 1.0.0)
- Erleichtert die Arbeit mit Strings
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-tidyr
- GNU R package to easily tidy data
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- dep: r-cran-xml (>= 3.98.0)
- GNU R package for XML parsing and generation
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- dep: r-cran-xml2
- GNU R XML parser
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- sug: r-bioc-affy
- BioConductor methods for Affymetrix Oligonucleotide Arrays
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- sug: r-bioc-annotationhub
- GNU R client to access AnnotationHub resources
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-complexheatmap
- make complex heatmaps using GNU R
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- sug: r-bioc-consensusclusterplus
- GNU R determining cluster count and membership
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- sug: r-bioc-edaseq
- GNU R exploratory data analysis and normalization for RNA-Seq
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- sug: r-bioc-edger
- Empirische Analyse von digitalen Genexpressionsdaten mit R
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- sug: r-bioc-experimenthub
- BioConductor client to access ExperimentHub resources
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- sug: r-bioc-genefilter
- methods for filtering genes from microarray experiments
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- sug: r-bioc-limma
- linear models for microarray data
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- sug: r-bioc-sva
- GNU R Surrogate Variable Analysis
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- sug: r-cran-circlize
- Circular Visualization
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- sug: r-cran-devtools
- Tools to Make Developing R Packages Easier
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- sug: r-cran-doparallel
- GNU R foreach parallel adaptor for the parallel package
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- sug: r-cran-dt
- GNU R wrapper of the JavaScript library 'DataTables'
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- sug: r-cran-ggrepel (>= 0.6.3)
- auto-position non-overlapping text labels in plots
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- sug: r-cran-gridextra
- GNU R: Erweiterungen für das grid-Paket
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- sug: r-cran-igraph
- GNU R network analysis and visualization
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- sug: r-cran-jpeg
- Read and write JPEG images
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- sug: r-cran-parmigene
- Parallel Mutual Information to establish Gene Networks
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- sug: r-cran-png
- GNU R package to read and write PNG images
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- sug: r-cran-rmarkdown
- Konvertierung von R-Markdown-Dokumenten in verschiedene Formate
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- sug: r-cran-scales
- Skalierungsfunktionen zur Visualisierung
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- sug: r-cran-seurat
- Tools for Single Cell Genomics
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- sug: r-cran-survival
- GNU-R-Paket für Ereigniszeitanalysen
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- sug: r-cran-survminer
- GNU R drawing survival curves using 'ggplot2'
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- sug: r-cran-testthat
- GNU R testsuite
r-bioc-tcgabiolinks herunterladen
Architektur | Paketgröße | Größe (installiert) | Dateien |
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all | 6.150,0 kB | 6.549,0 kB | [Liste der Dateien] |