[ Quellcode: pairtools ]
Paket: python3-pairtools (1.0.3-1)
Links für python3-pairtools
Debian-Ressourcen:
Quellcode-Paket pairtools herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [github.com]
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Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Andere Pakete mit Bezug zu python3-pairtools
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- dep: libc6 (>= 2.4)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC Support-Bibliothek
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- dep: libstdc++6 (>= 11)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: python3-numpy-abi9
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- dep: python3-pandas
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- dep: python3-pysam (>= 0.20.0+ds-3~)
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- dep: python3-scipy
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- dep: python3-yaml
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
python3-pairtools herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| armel | 199,0 kB | 903,0 kB | [Liste der Dateien] |