[ Quellcode: augur ]
Paket: augur (24.3.0-1)
Links für augur
Debian-Ressourcen:
Quellcode-Paket augur herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Andreas Tille (QS-Seite)
- Étienne Mollier (QS-Seite)
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.
nextstrain is comprised of three components:
* fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences
Andere Pakete mit Bezug zu augur
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: mafft
- Programm für multiples Alignment von Aminosäure- oder Nukleotidsequenzen
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-bcbio-gff
- Python3 library to read and write Generic Feature Format
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- dep: python3-biopython
- Python-3-Bibliothek für die Bioinformatik
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- dep: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
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- dep: python3-cvxopt
- Python3 package for convex optimization
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-importlib-resources
- Read resources from Python packages
- oder python3-supported-min (>= 3.11)
- Paket nicht verfügbar
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- dep: python3-ipdb
- IPython-based pdb replacement (Python 3 version)
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- dep: python3-isodate
- ISO 8601 date/time/duration parser and formatter (Python 3 module)
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- dep: python3-jsonschema
- An(other) implementation of JSON Schema
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- dep: python3-matplotlib
- Python-3-System ähnlich Matlab zur Ausgabe von Zeichnungen
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- dep: python3-networkx
- Werkzeug zum Erstellen, Manipulieren und Studieren komplexer Netzwerke (Python 3)
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-packaging
- Kern-Dienstprogramme für Python3-Pakete
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pyfastx
- fast random access to sequences from FASTA/Q file - python3 module
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- dep: python3-schedule
- Job scheduling for humans (Python 3)
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- dep: python3-scipy
- Wissenschaftliche Werkzeuge für Python 3
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- dep: python3-seaborn
- statistical visualization library for Python3
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- dep: python3-treetime (>= 0.9.4)
- inference of time stamped phylogenies and ancestral reconstruction (Python 3)
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- dep: python3-xopen (>= 1.7.0-1~)
- Python3 module to open compressed files transparently
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- dep: python3-zstandard
- Python bindings for interfacing with Zstandard library
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: seqmagick
- imagemagick-like frontend to Biopython SeqIO
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- dep: vcftools
- Collection of tools to work with VCF files
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- rec: iqtree
- efficient phylogenetic software by maximum likelihood
augur herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 211,4 kB | 930,0 kB | [Liste der Dateien] |