Paket: python3-shasta (0.7.0-3)

Links für python3-shasta

Debian-Ressourcen:

Quellcode-Paket shasta herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [github.com]

nanopore whole genome assembly (dynamic library)

De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Computational methods used by the Shasta assembler include:

 * Using a run-length representation of the read sequence. This makes
   the assembly process more resilient to errors in homopolymer
   repeat counts, which are the most common type of errors in Oxford
   Nanopore reads.

 * Using in some phases of the computation a representation of the read
   sequence based on markers, a fixed subset of short k-mers (k ≈ 10).

Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.

This package contains the dynamic library that can be interfaced and imported within Python.

Andere Pakete mit Bezug zu python3-shasta

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: libboost-program-options1.74.0 (>= 1.74.0)

C++-Bibliothek für Programmoptionen
dep: libc6 (>= 2.29)

GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.0) [arm64]

GCC Support-Bibliothek

dep: libgcc-s1 (>= 3.4) [amd64]
dep: libpng16-16 (>= 1.6.2-1)

PNG-Bibliothek - Laufzeit (Version 1.6)
dep: libpython3.9 (>= 3.9.0~b4)

Python-Laufzeitbibliothek (Version 3.9)
dep: libspoa7.0.0 (>= 4.0.5+ds) [amd64]

SIMD partial order alignment library

dep: libspoa7.0.0 (>= 4.0.6+ds2) [arm64]
dep: libstdc++6 (>= 9)

GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3 (<< 3.10)

Interaktive objektorientierte Hochsprache (Python3-Standardversion)

dep: python3 (>= 3.9~)

python3-shasta herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	1.463,9 kB	6.751,0 kB	[Liste der Dateien]
arm64	1.299,8 kB	6.234,0 kB	[Liste der Dateien]