Paket: libfreecontact0v5 (1.0.21-9)
Links für libfreecontact0v5
Debian-Ressourcen:
Quellcode-Paket freecontact herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Laszlo Kajan (QS-Seite)
- Andreas Tille (QS-Seite)
Externe Ressourcen:
- Homepage [rostlab.org]
Ähnliche Pakete:
fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the shared library implementing freecontact.
Andere Pakete mit Bezug zu libfreecontact0v5
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- dep: libblas3
- Grundlegende Unterprogramme für Lineare Algebra, gemeinsame Bibliothek
- oder libblas.so.3
- virtuelles Paket, bereitgestellt durch libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libc6 (>= 2.29)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC Support-Bibliothek
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- dep: libgfortran5 (>= 8)
- Laufzeitbibliothek für GNU-Fortran-Anwendungen
-
- dep: libgomp1 (>= 6)
- Unterstützungsbibliothek für GCC OpenMP (GOMP)
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- dep: liblapack3
- Bibliothek von Routinen für Lineare Algebra (3) - gemeinsame Version
- oder liblapack.so.3
- virtuelles Paket, bereitgestellt durch libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 5.2)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
libfreecontact0v5 herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| armel | 56,6 kB | 152,0 kB | [Liste der Dateien] |