Paket: parsnp (1.7.4+dfsg-2)

Links für parsnp

Debian-Ressourcen:

Quellcode-Paket parsnp herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [harvest.readthedocs.org]

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

Andere Pakete mit Bezug zu parsnp

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
dep: harvest-tools

archiving and postprocessing for reference-compressed genomic multi-alignments
dep: libc6 (>= 2.34)

GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC Support-Bibliothek
dep: libgomp1 (>= 6)

Unterstützungsbibliothek für GCC OpenMP (GOMP)
dep: libmuscle1 (>= 3.7+4565)

multiple alignment library for protein sequences
dep: libstdc++6 (>= 11)

GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
dep: mummer

Effizientes Sequenzalignment vollständiger Genome
dep: phipack

PHI test and other tests of recombination
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python-3-Bibliothek für die Bioinformatik
dep: python3-numpy

Schnelle Array-Einrichtung für die Sprache Python 3
dep: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees

rec: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)

parsnp herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
ppc64el	205,6 kB	1.984,0 kB	[Liste der Dateien]