[ Quellcode: tiddit ]
Paket: tiddit (3.5.2+dfsg-1)
Links für tiddit
Debian-Ressourcen:
Quellcode-Paket tiddit herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
Andere Pakete mit Bezug zu tiddit
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- dep: libc6 (>= 2.4)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-joblib
- tools to provide lightweight pipelining in Python
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- dep: python3-numpy
- Schnelle Array-Einrichtung für die Sprache Python 3
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
tiddit herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 265,3 kB | 1.151,0 kB | [Liste der Dateien] |