[ Quellcode: lumpy-sv ]
Paket: lumpy-sv (0.3.1+dfsg-7)
Links für lumpy-sv
Debian-Ressourcen:
Quellcode-Paket lumpy-sv herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Andreas Tille (QS-Seite)
- Nilesh Patra (QS-Seite)
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
Andere Pakete mit Bezug zu lumpy-sv
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- dep: bamkit
- tools for common BAM file manipulations
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- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC Support-Bibliothek
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhts3 (>= 1.10)
- C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate
-
- dep: libstdc++6 (>= 11)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Schnelle Array-Einrichtung für die Sprache Python 3
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samblaster
- marks duplicates, extracts discordant/split reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sambamba
- tools for working with SAM/BAM data
lumpy-sv herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 190,7 kB | 656,0 kB | [Liste der Dateien] |