Package: vcfanno-examples (0.3.2+ds-2)
Links for vcfanno-examples
Download Source Package vcfanno:
- Homepage [github.com]
examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special cases of ID and FILTER to pull from those VCF columns. * For BED, values are pulled from (1-based) column number. * For BAM, depth (count), "mapq" and "seq" are currently supported.
This package contains a test data set as well as sample scripts running some test suite provided by Debian also as autopkgtest.