[ Source: ggd-utils ]
Package: ggd-utils (0.0.7+ds-3 and others)
Links for ggd-utils
Debian Resources:
Download Source Package ggd-utils:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes
Other Packages Related to ggd-utils
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- dep: libc6 (>= 2.17) [arm64, ppc64el]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.3.6-6~) [i386]
- dep: libc6 (>= 2.4) [not arm64, i386, ppc64el]
Download ggd-utils
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 0.0.7+ds-3+b6 | 1,685.4 kB | 5,273.0 kB | [list of files] |
| arm64 | 0.0.7+ds-3+b6 | 1,441.3 kB | 4,860.0 kB | [list of files] |
| armel | 0.0.7+ds-3+b6 | 1,470.3 kB | 4,508.0 kB | [list of files] |
| armhf | 0.0.7+ds-3+b6 | 1,465.2 kB | 4,444.0 kB | [list of files] |
| i386 | 0.0.7+ds-3+b6 | 1,601.7 kB | 4,482.0 kB | [list of files] |
| mips64el | 0.0.7+ds-3+b6 | 1,362.7 kB | 5,335.0 kB | [list of files] |
| mipsel | 0.0.7+ds-3+b6 | 1,385.8 kB | 4,987.0 kB | [list of files] |
| ppc64el | 0.0.7+ds-3+b6 | 1,415.6 kB | 4,924.0 kB | [list of files] |
| s390x | 0.0.7+ds-3+b6 | 1,545.2 kB | 5,183.0 kB | [list of files] |