Package: e-mem (1.0.1-4)

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Homepage [www.csd.uwo.ca]

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Efficient computation of Maximal Exact Matches for very large genomes

E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided.

Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance.

Other Packages Related to e-mem

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]
dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

GCC support library

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

enh: mummer

Efficient sequence alignment of full genomes

Download e-mem

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	34.1 kB	106.0 kB	[list of files]
arm64	30.9 kB	94.0 kB	[list of files]
armel	33.9 kB	101.0 kB	[list of files]
armhf	33.5 kB	81.0 kB	[list of files]
i386	40.2 kB	117.0 kB	[list of files]
mips64el	33.6 kB	117.0 kB	[list of files]
mipsel	40.9 kB	120.0 kB	[list of files]
ppc64el	34.4 kB	162.0 kB	[list of files]
s390x	31.5 kB	102.0 kB	[list of files]