Пакет: centrifuge (1.0.3-12) [debports]
Връзки за centrifuge
Ресурси за Debian:
Изтегляне на пакет-източник .
Няма съвпаденияОтговорници:
Външни препратки:
- Начална страница [ccb.jhu.edu]
Подобни пакети:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Други пакети, свързани с centrifuge
|
|
|
|
-
- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- dep: jellyfish
- count k-mers in DNA sequences
-
- dep: libc6.1 (>= 2.37)
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6.1-udeb
-
- dep: libgcc-s1 (>= 4.2)
- GCC support library
-
- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
-
- dep: libunwind8
- library to determine the call-chain of a program - runtime
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
Изтегляне на centrifuge
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| ia64 (неофициална архитектура) | 779,7 кБ | 3 011,0 кБ | [списък на файловете] |