Пакет: python3-seqcluster (1.2.9+ds-3) [contrib]

Връзки за python3-seqcluster

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Начална страница [github.com]

Подобни пакети:

analysis of small RNA in NGS data

Identifies small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to.

This package provides the Python module. For executables see the package 'seqcluster'.

Други пакети, свързани с python3-seqcluster

зависимости

препоръчани

предложени

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-colorlog

formatter to use with the logging module of Python 3
dep: python3-mirtop

annotate miRNAs with a standard mirna/isomir naming (Python 3)
dep: python3-myst-parser

rich and extensible flavor of Markdown for technical docs
dep: python3-nose2

Next generation of nicer testing for Python3
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-progressbar

text progress bar library for Python (Python 3)
dep: python3-pybedtools

Python 3 wrapper around BEDTools for bioinformatics work
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-yaml

YAML parser and emitter for Python3

rec: bedtools

suite of utilities for comparing genomic features
rec: bowtie2

ultrafast memory-efficient short read aligner

или bowtie

Ultrafast memory-efficient short read aligner
rec: fastqc

quality control for high throughput sequence data
rec: libjs-bootstrap

HTML, CSS and JS framework
rec: libjs-jquery

JavaScript library for dynamic web applications
rec: libjs-jquery-datatables

jQuery plug-in that makes nice tables from different data sources
rec: libjs-jquery-tablesorter

jQuery flexible client-side table sorting plugin
rec: libjs-jquery-ui

JavaScript UI library for dynamic web applications
rec: mirtop

annotate miRNAs with a standard mirna/isomir naming
rec: python3-cutadapt

Clean biological sequences from high-throughput sequencing reads (Python 3)
rec: python3-dateutils

Пакетът не е наличен
rec: python3-tz

Python3 version of the Olson timezone database
rec: r-bioc-degreport

BioConductor report of DEG analysis
rec: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
rec: r-bioc-edger

Empirical analysis of digital gene expression data in R
rec: r-bioc-htsfilter

GNU R filter replicated high-throughput transcriptome sequencing data
rec: r-cran-devtools

Tools to Make Developing R Packages Easier
rec: r-cran-dplyr

GNU R grammar of data manipulation
rec: r-cran-ggplot2

implementation of the Grammar of Graphics
rec: r-cran-gplots

GNU R package with tools for plotting data by Greg Warnes et al
rec: r-cran-gridextra

GNU R package with extensions for the grid package
rec: r-cran-gtools

GNU R package with R programming tools by Greg Warnes et al
rec: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
rec: r-cran-pheatmap

GNU R package to create pretty heatmaps
rec: r-cran-reshape

Flexibly reshape data
rec: rna-star

ultrafast universal RNA-seq aligner
rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats
rec: vienna-rna

RNA sequence analysis

sug: seqcluster

analysis of small RNA in NGS data

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