Пакет: seer (1.1.4-2 и други)
Връзки за seer
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Изтегляне на пакет-източник seer.
Отговорници:
Външни препратки:
- Начална страница [github.com]
Подобни пакети:
genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.
Други пакети, свързани с seer
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- dep: libarmadillo9 (>= 1:9.100.6+dfsg)
- streamlined C++ linear algebra library
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- или libblas.so.3
- виртуален пакет, предлаган от libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base
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- dep: libboost-program-options1.67.0
- program options library for C++
-
- dep: libc6 (>= 2.17)
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
-
- dep: libgcc1 (>= 1:4.5)
- GCC support library
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- или liblapack.so.3
- виртуален пакет, предлаган от libatlas3-base, liblapack3, libopenblas-base
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- dep: libstdc++6 (>= 7)
- GNU Standard C++ Library v3
-
- dep: libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: fsm-lite
- frequency-based string mining (lite)
Изтегляне на seer
| Архитектура | Версия | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|---|
| arm64 | 1.1.4-2+b2 | 361,0 кБ | 1 568,0 кБ | [списък на файловете] |